9 variations found. Os08g0465700/LOC_Os08g36310 (cytochrome P450; putative; expressed), ranging from 22,876,100 bp to 22,877,810 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os08g36310 | cytochrome P450, putative, expressed; RAP ID: Os08g0465700; MSU ID: LOC_Os08g36310 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os08g36310 | Os08g0465700 | CYP76M1 | Cytochrome P450 76M1 | CYP76M1 | P-450 76M1 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0822876213 (J) | chr08 | 22876213 | G | A | 99.80% | 0.00% | G -> A | NA |
LOC_Os08g36310.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 96.012; most accessible tissue: Zhenshan97 flag leaf, score: 98.575 |
| vg0822876281 (J) | chr08 | 22876281 | C | A | 95.80% | 0.00% | C -> A | NA |
LOC_Os08g36310.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 95.721; most accessible tissue: Zhenshan97 flag leaf, score: 98.488 |
| vg0822876991 (J) | chr08 | 22876991 | C | G | 84.60% | 0.00% | C -> G |
LOC_Os08g36310.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 89.437; most accessible tissue: Zhenshan97 flag leaf, score: 96.925 |
|
| vg0822877001 (J) | chr08 | 22877001 | G | A | 99.90% | 0.00% | G -> A | NA |
LOC_Os08g36310.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os08g36300.1 Alt: A| upstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.3 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.5 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 89.559; most accessible tissue: Zhenshan97 flag leaf, score: 96.963 |
| vg0822877002 (J) | chr08 | 22877002 | C | T | 96.00% | 0.00% | C -> T |
LOC_Os08g36310.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 89.557; most accessible tissue: Zhenshan97 flag leaf, score: 96.977 |
|
| vg0822877749 (J) | chr08 | 22877749 | A | G | 99.90% | 0.00% | A -> G | NA |
LOC_Os08g36310.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)
LOC_Os08g36320.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.3 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.5 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 92.851; most accessible tissue: Zhenshan97 young leaf, score: 98.963 |
| vg0822877758 (J) | chr08 | 22877758 | A | G | 99.40% | 0.00% | A -> G | NA |
LOC_Os08g36310.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os08g36320.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.3 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.2 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.4 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.5 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 92.625; most accessible tissue: Zhenshan97 young leaf, score: 98.893 |
| vg0822877759 (J) | chr08 | 22877759 | T | TA | 99.30% | 0.00% | T -> TA | NA |
LOC_Os08g36310.1 Alt: TA| 3_prime_UTR_variant MODIFIER(snpEff)
LOC_Os08g36320.1 Alt: TA| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.3 Alt: TA| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.2 Alt: TA| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.4 Alt: TA| downstream_gene_variant MODIFIER(snpEff) LOC_Os08g36320.5 Alt: TA| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 92.556; most accessible tissue: Zhenshan97 young leaf, score: 98.889 |
| vg0822877808 (J) | chr08 | 22877808 | G | A | 66.70% | 0.00% | A -> G | NA |
LOC_Os08g36310.1 Alt: G| splice_region_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os08g36310.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.3 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.2 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.4 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os08g36320.5 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 90.049; most accessible tissue: Zhenshan97 young leaf, score: 98.414 |