12 variations found. Os06g0691100/LOC_Os06g47590 (AP2 domain containing protein; expressed), ranging from 28,818,161 bp to 28,819,180 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os06g47590 | AP2 domain containing protein, expressed; RAP ID: Os06g0691100; MSU ID: LOC_Os06g47590 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os06g47590 | Os06g0691100 | OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61 | ethylene response factor 121, APETALA2/ethylene-responsive element binding protein 61 | ERF121 | ETHYLENE RESPONSE FACTOR 121 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0628818260 (J) | chr06 | 28818260 | C | G | 94.60% | 0.00% | C -> G | NA |
LOC_Os06g47590.1 Alt: G| 5_prime_UTR_premature_start_codon_gain_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os06g47590.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.017; most accessible tissue: Zhenshan97 flower, score: 99.670 |
| vg0628818305 (J) | chr06 | 28818305 | G | C | 69.30% | 0.08% | G -> C | NA |
LOC_Os06g47590.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g47580.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 98.789; most accessible tissue: Zhenshan97 flower, score: 99.482 |
| vg0628818315 (J) | chr06 | 28818315 | G | A | 60.10% | 0.08% | A -> G | NA |
LOC_Os06g47590.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g47580.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 98.684; most accessible tissue: Zhenshan97 flower, score: 99.419 |
| vg0628818576 (J) | chr06 | 28818576 | G | GGCC | 24.50% | 54.13% | G -> GGCC | NA |
LOC_Os06g47590.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os06g47590.1 Alt: GGCC| inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) The average chromatin accessibility score: 93.519; most accessible tissue: Minghui63 panicle, score: 98.608 |
| vg0628818581 (J) | chr06 | 28818581 | C | CCGGCGG CGG | 35.80% | 16.89% | C -> CCGGCGGCGG CGG,CCGGCG GCGG | NA |
LOC_Os06g47590.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os06g47590.1 Alt: CCGGCGGCGGCGG| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) LOC_Os06g47590.1 Alt: CCGGCGGCGG| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) The average chromatin accessibility score: 93.255; most accessible tissue: Minghui63 panicle, score: 98.323 |
| vg0628818584 (J) | chr06 | 28818584 | G | C | 22.90% | 32.40% | G -> C,GC | NA |
LOC_Os06g47590.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os06g47590.1 Alt: DEL/frameshift_variant(CooVar) LOC_Os06g47590.1 Alt: GC| frameshift_variant HIGH(snpEff)/frameshift_variant(CooVar) The average chromatin accessibility score: 93.237; most accessible tissue: Minghui63 panicle, score: 98.310 |
| vg0628818587 (J) | chr06 | 28818587 | G | C | 47.50% | 9.61% | G -> C | NA |
LOC_Os06g47590.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os06g47590.1 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 93.244; most accessible tissue: Minghui63 panicle, score: 98.323 |
| vg0628818685 (J) | chr06 | 28818685 | C | G | 69.10% | 0.00% | C -> G | NA |
LOC_Os06g47590.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 94.827; most accessible tissue: Minghui63 panicle, score: 97.877 |
| vg0628818974 (J) | chr06 | 28818974 | C | T | 73.30% | 0.00% | C -> T |
LOC_Os06g47590.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g47580.1 Alt: T| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: T| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: T| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 86.457; most accessible tissue: Zhenshan97 flag leaf, score: 90.996 |
|
| vg0628819043 (J) | chr06 | 28819043 | C | A | 98.90% | 0.00% | C -> A | NA |
LOC_Os06g47590.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g47580.1 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: A| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 81.067; most accessible tissue: Zhenshan97 flag leaf, score: 86.342 |
| vg0628819054 (J) | chr06 | 28819054 | C | CT | 98.50% | 0.00% | C -> CT | NA |
LOC_Os06g47590.1 Alt: CT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os06g47580.1 Alt: CT| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.2 Alt: CT| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os06g47580.3 Alt: CT| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 81.007; most accessible tissue: Zhenshan97 flag leaf, score: 85.638 |
| STR0628819055 (J) | chr06 | 28819055 | TT | TTT | 99.00% | 0.00% | TT -> TTT | NA |
|