29 variations found. Os05g0530701/LOC_Os05g45430 (TOO MANY MOUTHS precursor; putative; expressed), ranging from 26,356,707 bp to 26,358,549 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os05g45430 | TOO MANY MOUTHS precursor, putative, expressed; RAP ID: Os05g0530701; MSU ID: LOC_Os05g45430 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0526356707 (J) | chr05 | 26356707 | A | T | 99.50% | 0.00% | A -> T,G | NA |
LOC_Os05g45430.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)
LOC_Os05g45420-LOC_Os05g45430 Alt: T| intergenic_region MODIFIER(snpEff) LOC_Os05g45430.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os05g45420-LOC_Os05g45430 Alt: G| intergenic_region MODIFIER(snpEff) The average chromatin accessibility score: 90.424; most accessible tissue: Minghui63 panicle, score: 99.063 |
| vg0526356708 (J) | chr05 | 26356708 | G | T | 90.50% | 0.00% | G -> T | NA |
LOC_Os05g45430.1 Alt: T| splice_region_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 90.479; most accessible tissue: Minghui63 panicle, score: 99.069 |
| vg0526356711 (J) | chr05 | 26356711 | A | G | 54.60% | 0.42% | G -> A |
mr1058 (All); LR P-value: 2.41E-06;
mr1109 (All); LR P-value: 4.89E-51; mr1129 (All); LR P-value: 1.93E-37; mr1251 (All); LR P-value: 2.69E-25; mr1253 (All); LR P-value: 9.20E-21; mr1255 (All); LR P-value: 2.40E-21; mr1257 (All); LR P-value: 1.30E-33; mr1261 (All); LR P-value: 1.13E-14; mr1435 (All); LR P-value: 6.08E-37; mr1610 (All); LR P-value: 2.96E-09; mr1648 (All); LR P-value: 4.95E-08; mr1716 (All); LR P-value: 3.03E-07; mr1819 (All); LR P-value: 4.61E-11; mr1828 (All); LR P-value: 3.25E-37; mr1915 (All); LR P-value: 3.92E-07; mr1938 (All); LR P-value: 3.02E-14; mr1089_2 (All); LR P-value: 5.66E-51; mr1109_2 (All); LR P-value: 4.36E-60; mr1109_2 (Ind_All); LR P-value: 5.55E-09; mr1129_2 (All); LR P-value: 5.47E-37; mr1195_2 (Ind_All); LR P-value: 1.12E-09; mr1253_2 (All); LR P-value: 2.01E-27; mr1255_2 (All); LR P-value: 2.53E-21; mr1257_2 (All); LR P-value: 2.58E-34; mr1349_2 (All); LR P-value: 2.81E-12; mr1352_2 (Ind_All); LR P-value: 8.79E-10; mr1358_2 (All); LR P-value: 3.61E-07; mr1478_2 (All); LR P-value: 1.87E-09; mr1546_2 (Ind_All); LR P-value: 2.15E-11; mr1598_2 (All); LR P-value: 5.56E-34; mr1599_2 (Ind_All); LR P-value: 3.80E-08; mr1649_2 (All); LR P-value: 8.23E-11; mr1654_2 (Ind_All); LR P-value: 9.77E-06; mr1828_2 (All); LMM P-value: 5.64E-06; mr1828_2 (Ind_All); LR P-value: 1.86E-10; mr1938_2 (All); LR P-value: 4.90E-16; mr1971_2 (All); LR P-value: 8.42E-22 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 90.421; most accessible tissue: Minghui63 panicle, score: 99.126 |
| vg0526356726 (J) | chr05 | 26356726 | G | A | 57.80% | 0.17% | A -> G |
mr1038 (All); LMM P-value: 1.48E-08;
mr1038 (Ind_All); LMM P-value: 1.06E-07; LR P-value: 9.00E-10; mr1141 (All); LR P-value: 1.71E-44; mr1352 (Ind_All); LR P-value: 5.95E-06; mr1389 (All); LMM P-value: 5.18E-07; mr1389 (Ind_All); LMM P-value: 8.68E-06; LR P-value: 5.69E-08; mr1743 (Ind_All); LR P-value: 9.69E-07; mr1030_2 (All); LR P-value: 9.60E-08; mr1141_2 (All); LR P-value: 3.55E-54; mr1141_2 (Ind_All); LR P-value: 2.09E-09; mr1195_2 (All); LR P-value: 1.54E-18; mr1358_2 (All); LR P-value: 1.47E-07; mr1389_2 (Ind_All); LR P-value: 8.23E-07; mr1546_2 (Ind_All); LR P-value: 1.49E-10; mr1555_2 (All); LR P-value: 6.57E-06; mr1624_2 (Ind_All); LR P-value: 7.70E-06; mr1654_2 (All); LR P-value: 1.14E-07; mr1654_2 (Ind_All); LR P-value: 1.07E-06; mr1749_2 (All); LR P-value: 1.64E-07; mr1821_2 (All); LR P-value: 7.70E-08 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.298; most accessible tissue: Minghui63 panicle, score: 99.188 |
| vg0526356736 (J) | chr05 | 26356736 | A | G | 99.50% | 0.00% | A -> G | NA |
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)
The average chromatin accessibility score: 91.715; most accessible tissue: Minghui63 panicle, score: 99.244 |
| vg0526356737 (J) | chr05 | 26356737 | G | T | 99.90% | 0.00% | G -> T | NA |
LOC_Os05g45430.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)
The average chromatin accessibility score: 91.711; most accessible tissue: Minghui63 panicle, score: 99.244 |
| vg0526356740 (J) | chr05 | 26356740 | G | A | 65.60% | 0.23% | A -> G |
mr1016 (Ind_All); LR P-value: 1.95E-13;
mr1022 (All); LR P-value: 3.45E-28; mr1022 (Ind_All); LR P-value: 8.50E-15; mr1038 (Jap_All); LMM P-value: 1.41E-07; LR P-value: 1.41E-07; mr1044 (Ind_All); LR P-value: 2.83E-06; mr1059 (All); LR P-value: 5.88E-15; mr1079 (Ind_All); LR P-value: 1.96E-13; mr1142 (Ind_All); LR P-value: 2.06E-11; mr1178 (Ind_All); LR P-value: 3.29E-13; mr1389 (Jap_All); LMM P-value: 6.73E-06; LR P-value: 6.73E-06; mr1390 (Ind_All); LR P-value: 2.01E-11; mr1489 (Ind_All); LR P-value: 7.03E-07; mr1490 (Ind_All); LR P-value: 2.04E-12; mr1491 (Ind_All); LR P-value: 8.22E-11; mr1535 (All); LR P-value: 1.88E-14; mr1546 (Ind_All); LR P-value: 1.30E-09; mr1726 (All); LR P-value: 1.88E-13; mr1903 (All); LR P-value: 8.02E-25; mr1995 (All); LR P-value: 1.88E-16; mr1022_2 (Ind_All); LR P-value: 1.73E-13; mr1030_2 (All); LR P-value: 5.48E-08; mr1079_2 (Ind_All); LR P-value: 3.57E-12; mr1115_2 (Ind_All); LR P-value: 2.38E-06; mr1132_2 (Ind_All); LR P-value: 6.05E-12; mr1175_2 (All); LR P-value: 2.81E-21; mr1193_2 (Ind_All); LR P-value: 8.27E-07; mr1195_2 (All); LR P-value: 4.03E-22; mr1195_2 (Ind_All); LR P-value: 4.47E-12; mr1235_2 (Ind_All); LR P-value: 1.26E-07; mr1253_2 (All); LR P-value: 1.70E-21; mr1253_2 (Ind_All); LR P-value: 5.27E-06; mr1352_2 (Ind_All); LR P-value: 3.66E-10; mr1358_2 (All); LR P-value: 1.01E-06; mr1389_2 (Jap_All); LMM P-value: 3.91E-07; LR P-value: 3.91E-07; mr1390_2 (Ind_All); LR P-value: 2.50E-12; mr1408_2 (All); LR P-value: 1.35E-07; mr1482_2 (All); LR P-value: 2.12E-07; mr1482_2 (Ind_All); LR P-value: 1.15E-06; mr1490_2 (Ind_All); LR P-value: 9.43E-12; mr1546_2 (All); LR P-value: 3.75E-50; mr1546_2 (Ind_All); LR P-value: 3.85E-13; mr1555_2 (All); LR P-value: 6.29E-07; mr1580_2 (Ind_All); LR P-value: 3.34E-06; mr1587_2 (All); LR P-value: 4.48E-16; mr1587_2 (Ind_All); LR P-value: 7.12E-06; mr1599_2 (Ind_All); LR P-value: 1.57E-08; mr1654_2 (All); LR P-value: 3.73E-07; mr1654_2 (Ind_All); LR P-value: 6.56E-06; mr1682_2 (Ind_All); LR P-value: 4.88E-07; mr1805_2 (Ind_All); LR P-value: 1.92E-07; mr1825_2 (Ind_All); LR P-value: 5.55E-06; mr1828_2 (All); LMM P-value: 9.01E-07; LR P-value: 1.90E-71; mr1828_2 (Ind_All); LMM P-value: 3.70E-06; LR P-value: 2.04E-11; mr1837_2 (All); LR P-value: 4.27E-08; mr1915_2 (All); LR P-value: 3.17E-06; mr1938_2 (All); LR P-value: 1.89E-15 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.732; most accessible tissue: Minghui63 panicle, score: 99.249 |
| vg0526356746 (J) | chr05 | 26356746 | G | A | 99.80% | 0.00% | G -> A | NA |
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)
The average chromatin accessibility score: 92.049; most accessible tissue: Minghui63 panicle, score: 99.270 |
| vg0526356750 (J) | chr05 | 26356750 | G | A | 97.40% | 0.00% | G -> A | NA |
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 92.091; most accessible tissue: Minghui63 panicle, score: 99.270 |
| vg0526356752 (J) | chr05 | 26356752 | C | T | 99.50% | 0.00% | C -> T | NA |
LOC_Os05g45430.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)
The average chromatin accessibility score: 92.059; most accessible tissue: Minghui63 panicle, score: 99.266 |
| vg0526356755 (J) | chr05 | 26356755 | G | A | 99.70% | 0.00% | G -> A | NA |
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 92.409; most accessible tissue: Minghui63 panicle, score: 99.295 |
| vg0526356766 (J) | chr05 | 26356766 | G | A | 61.60% | 0.40% | A -> G |
mr1016 (Ind_All); LR P-value: 2.79E-12;
mr1022 (All); LR P-value: 4.93E-30; mr1022 (Ind_All); LR P-value: 1.84E-13; mr1059 (All); LR P-value: 1.66E-14; mr1141 (All); LR P-value: 5.87E-44; mr1178 (Ind_All); LR P-value: 6.13E-12; mr1301 (Ind_All); LR P-value: 5.13E-08; mr1546 (All); LR P-value: 2.12E-29; mr1546 (Ind_All); LR P-value: 1.76E-08; mr1726 (All); LR P-value: 1.50E-13; mr1915 (All); LR P-value: 3.90E-07; mr1030_2 (All); LR P-value: 2.84E-07; mr1109_2 (Ind_All); LR P-value: 2.21E-08; mr1141_2 (All); LR P-value: 1.16E-56; mr1175_2 (All); LR P-value: 1.91E-21; mr1195_2 (All); LR P-value: 7.97E-21; mr1195_2 (Ind_All); LR P-value: 2.07E-10; mr1235_2 (Ind_All); LR P-value: 9.47E-08; mr1352_2 (Ind_All); LR P-value: 3.39E-10; mr1358_2 (All); LR P-value: 1.62E-06; mr1546_2 (All); LR P-value: 1.01E-50; mr1546_2 (Ind_All); LR P-value: 3.60E-13; mr1599_2 (Ind_All); LR P-value: 3.06E-08; mr1654_2 (All); LR P-value: 7.12E-07; mr1654_2 (Ind_All); LR P-value: 8.90E-07; mr1682_2 (Ind_All); LR P-value: 5.83E-06; mr1805_2 (Ind_All); LR P-value: 6.60E-07; mr1828_2 (All); LMM P-value: 1.84E-06; LR P-value: 1.75E-72; mr1828_2 (Ind_All); LR P-value: 2.19E-10; mr1837_2 (All); LR P-value: 1.31E-07; mr1938_2 (All); LR P-value: 1.16E-14 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 92.403; most accessible tissue: Minghui63 panicle, score: 99.307 |
| vg0526356777 (J) | chr05 | 26356777 | A | G | 99.50% | 0.00% | A -> G | NA |
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)
The average chromatin accessibility score: 92.184; most accessible tissue: Minghui63 panicle, score: 99.278 |
| vg0526356784 (J) | chr05 | 26356784 | A | G | 62.10% | 0.40% | G -> A |
mr1016 (Ind_All); LR P-value: 1.13E-12;
mr1022 (All); LR P-value: 7.50E-30; mr1022 (Ind_All); LR P-value: 2.57E-13; mr1059 (All); LR P-value: 3.87E-15; mr1079 (Ind_All); LR P-value: 1.02E-11; mr1141 (All); LR P-value: 2.47E-43; mr1142 (Ind_All); LR P-value: 1.18E-10; mr1143 (All); LR P-value: 4.67E-15; mr1167 (All); LR P-value: 9.54E-16; mr1178 (Ind_All); LR P-value: 6.34E-12; mr1301 (Ind_All); LR P-value: 4.72E-08; mr1546 (All); LR P-value: 1.24E-30; mr1546 (Ind_All); LR P-value: 9.93E-10; mr1675 (All); LR P-value: 9.05E-15; mr1726 (All); LR P-value: 5.69E-14; mr1915 (All); LR P-value: 1.57E-07; mr1995 (All); LR P-value: 1.97E-16; mr1030_2 (All); LR P-value: 3.50E-07; mr1115_2 (Ind_All); LR P-value: 1.48E-06; mr1141_2 (All); LR P-value: 1.69E-56; mr1175_2 (All); LR P-value: 1.07E-21; mr1195_2 (All); LR P-value: 8.89E-21; mr1195_2 (Ind_All); LR P-value: 2.09E-10; mr1235_2 (Ind_All); LR P-value: 8.31E-08; mr1352_2 (Ind_All); LR P-value: 4.59E-10; mr1358_2 (All); LR P-value: 1.08E-06; mr1546_2 (All); LR P-value: 2.66E-51; mr1546_2 (Ind_All); LR P-value: 1.32E-13; mr1599_2 (Ind_All); LR P-value: 2.41E-08; mr1682_2 (Ind_All); LR P-value: 8.01E-07; mr1828_2 (All); LMM P-value: 6.28E-07; LR P-value: 2.59E-74; mr1828_2 (Ind_All); LMM P-value: 3.15E-06; LR P-value: 2.26E-11; mr1837_2 (All); LR P-value: 4.96E-08; mr1915_2 (All); LR P-value: 1.72E-06; mr1938_2 (All); LR P-value: 5.24E-15 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.887; most accessible tissue: Minghui63 panicle, score: 99.257 |
| vg0526356789 (J) | chr05 | 26356789 | C | T | 62.00% | 0.40% | T -> C |
mr1016 (Ind_All); LR P-value: 6.42E-12;
mr1022 (All); LR P-value: 1.72E-29; mr1022 (Ind_All); LR P-value: 8.25E-13; mr1032 (Ind_All); LR P-value: 6.02E-06; mr1059 (All); LR P-value: 3.77E-15; mr1141 (All); LR P-value: 3.03E-44; mr1143 (All); LR P-value: 3.48E-15; mr1167 (All); LR P-value: 6.75E-16; mr1301 (Ind_All); LR P-value: 8.51E-08; mr1546 (All); LR P-value: 5.18E-30; mr1546 (Ind_All); LR P-value: 4.48E-09; mr1675 (All); LR P-value: 8.06E-15; mr1726 (All); LR P-value: 3.79E-14; mr1915 (All); LR P-value: 3.46E-07; mr1969 (All); LR P-value: 2.82E-14; mr1995 (All); LR P-value: 9.90E-17; mr1115_2 (Ind_All); LR P-value: 1.81E-06; mr1141_2 (All); LR P-value: 4.66E-57; mr1175_2 (All); LR P-value: 1.10E-21; mr1195_2 (All); LR P-value: 1.44E-20; mr1195_2 (Ind_All); LR P-value: 4.50E-10; mr1235_2 (Ind_All); LR P-value: 1.79E-07; mr1352_2 (Ind_All); LR P-value: 1.20E-09; mr1358_2 (All); LR P-value: 1.76E-06; mr1546_2 (All); LR P-value: 4.02E-50; mr1546_2 (Ind_All); LR P-value: 1.93E-12; mr1645_2 (All); LR P-value: 1.02E-07; mr1682_2 (Ind_All); LR P-value: 7.35E-07; mr1828_2 (All); LMM P-value: 1.29E-06; LR P-value: 2.01E-73; mr1828_2 (Ind_All); LMM P-value: 7.70E-06; LR P-value: 5.28E-11; mr1837_2 (All); LR P-value: 5.43E-08; mr1915_2 (All); LR P-value: 1.97E-06; mr1938_2 (All); LR P-value: 4.75E-15 |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 91.651; most accessible tissue: Minghui63 panicle, score: 99.249 |
| vg0526356796 (J) | chr05 | 26356796 | G | C | 98.30% | 0.00% | G -> C | NA |
LOC_Os05g45430.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 91.733; most accessible tissue: Minghui63 panicle, score: 99.249 |
| vg0526356818 (J) | chr05 | 26356818 | C | G | 99.10% | 0.00% | C -> G | NA |
LOC_Os05g45430.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 91.883; most accessible tissue: Minghui63 panicle, score: 99.295 |
| vg0526356823 (J) | chr05 | 26356823 | A | G | 62.20% | 0.00% | G -> A |
mr1016 (Ind_All); LR P-value: 1.79E-13;
mr1022 (All); LR P-value: 2.49E-30; mr1022 (Ind_All); LR P-value: 1.54E-14; mr1032 (Ind_All); LR P-value: 9.48E-06; mr1059 (All); LR P-value: 8.76E-15; mr1079 (Ind_All); LR P-value: 2.89E-12; mr1141 (All); LR P-value: 7.37E-43; mr1142 (Ind_All); LR P-value: 5.21E-11; mr1167 (All); LR P-value: 2.25E-15; mr1178 (Ind_All); LR P-value: 7.48E-13; mr1301 (Ind_All); LR P-value: 2.11E-08; mr1490 (Ind_All); LR P-value: 2.40E-11; mr1491 (Ind_All); LR P-value: 2.18E-10; mr1546 (All); LR P-value: 1.13E-30; mr1546 (Ind_All); LR P-value: 1.46E-09; mr1915 (All); LR P-value: 1.06E-07; mr1022_2 (Ind_All); LR P-value: 5.07E-13; mr1030_2 (All); LR P-value: 2.58E-07; mr1115_2 (Ind_All); LR P-value: 1.10E-06; mr1141_2 (All); LR P-value: 5.86E-56; mr1175_2 (All); LR P-value: 1.15E-21; mr1195_2 (All); LR P-value: 1.60E-20; mr1195_2 (Ind_All); LR P-value: 4.31E-11; mr1253_2 (All); LR P-value: 5.20E-21; mr1352_2 (Ind_All); LR P-value: 1.63E-10; mr1358_2 (All); LR P-value: 1.03E-06; mr1482_2 (Ind_All); LR P-value: 3.74E-06; mr1546_2 (All); LR P-value: 2.37E-50; mr1546_2 (Ind_All); LR P-value: 2.09E-14; mr1599_2 (Ind_All); LR P-value: 6.09E-08; mr1617_2 (All); LR P-value: 2.49E-26; mr1654_2 (Ind_All); LR P-value: 9.19E-06; mr1682_2 (Ind_All); LR P-value: 7.91E-07; mr1805_2 (Ind_All); LR P-value: 3.21E-07; mr1828_2 (All); LMM P-value: 1.91E-06; LR P-value: 1.07E-73; mr1828_2 (Ind_All); LMM P-value: 1.92E-06; LR P-value: 1.77E-11; mr1837_2 (All); LR P-value: 3.99E-08; mr1915_2 (All); LR P-value: 1.99E-06; mr1938_2 (All); LR P-value: 3.35E-15 |
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 92.089; most accessible tissue: Minghui63 panicle, score: 99.331 |
| vg0526356829 (J) | chr05 | 26356829 | G | A | 98.90% | 0.00% | G -> A | NA |
LOC_Os05g45430.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
The average chromatin accessibility score: 91.948; most accessible tissue: Minghui63 panicle, score: 99.315 |
| vg0526356977 (J) | chr05 | 26356977 | G | GC | 93.60% | 0.00% | G -> GC | NA |
The average chromatin accessibility score: 94.154; most accessible tissue: Minghui63 panicle, score: 99.338
|
| vg0526357008 (J) | chr05 | 26357008 | T | TTA | 62.20% | 0.40% | TTA -> T | NA |
LOC_Os05g45430.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 94.480; most accessible tissue: Minghui63 panicle, score: 99.338 |
| vg0526357208 (J) | chr05 | 26357208 | G | C | 99.50% | 0.00% | G -> C | NA |
LOC_Os05g45430.1 Alt: C| missense_variant MODERATE(snpEff)
The average chromatin accessibility score: 91.741; most accessible tissue: Minghui63 panicle, score: 98.268 |
| vg0526357245 (J) | chr05 | 26357245 | C | T | 99.90% | 0.00% | C -> T | NA |
LOC_Os05g45430.1 Alt: T| missense_variant MODERATE(snpEff)
The average chromatin accessibility score: 91.610; most accessible tissue: Minghui63 panicle, score: 97.952 |
| vg0526357849 (J) | chr05 | 26357849 | G | A | 99.50% | 0.00% | G -> A | NA |
LOC_Os05g45430.1 Alt: A| synonymous_variant LOW(snpEff)
The average chromatin accessibility score: 85.965; most accessible tissue: Minghui63 panicle, score: 94.394 |
| vg0526358098 (J) | chr05 | 26358098 | A | C | 53.90% | 0.32% | C -> A |
mr1022 (Ind_All); LR P-value: 6.07E-13;
mr1058 (All); LR P-value: 3.12E-07; mr1089 (All); LR P-value: 1.70E-43; mr1093 (All); LR P-value: 3.83E-42; mr1109 (All); LR P-value: 9.67E-55; mr1129 (All); LR P-value: 2.64E-40; mr1199 (All); LR P-value: 3.99E-15; mr1251 (All); LR P-value: 1.38E-26; mr1253 (All); LR P-value: 4.57E-22; mr1255 (All); LR P-value: 2.08E-22; mr1257 (All); LR P-value: 5.54E-36; mr1261 (All); LR P-value: 7.56E-15; mr1301 (Ind_All); LR P-value: 6.64E-08; mr1435 (All); LR P-value: 7.22E-39; mr1599 (All); LR P-value: 5.12E-51; mr1610 (All); LR P-value: 3.49E-09; mr1648 (All); LR P-value: 1.17E-08; mr1716 (All); LR P-value: 2.28E-07; mr1763 (All); LR P-value: 6.50E-07; mr1819 (All); LR P-value: 1.08E-10; mr1828 (All); LR P-value: 9.45E-38; mr1837 (All); LR P-value: 8.63E-06; mr1915 (All); LR P-value: 2.56E-07; mr1938 (All); LR P-value: 1.25E-15; mr1089_2 (All); LR P-value: 2.50E-53; mr1089_2 (Ind_All); LR P-value: 3.55E-07; mr1093_2 (Ind_All); LR P-value: 4.86E-08; mr1109_2 (All); LR P-value: 1.21E-63; mr1109_2 (Ind_All); LR P-value: 2.47E-09; mr1129_2 (All); LR P-value: 6.57E-39; mr1195_2 (Ind_All); LR P-value: 8.29E-10; mr1235_2 (Ind_All); LR P-value: 5.18E-08; mr1251_2 (All); LR P-value: 1.09E-37; mr1253_2 (All); LR P-value: 5.03E-29; mr1255_2 (All); LR P-value: 1.55E-22; mr1257_2 (All); LR P-value: 8.64E-37; mr1349_2 (All); LR P-value: 1.25E-11; mr1352_2 (Ind_All); LR P-value: 4.74E-10; mr1358_2 (All); LR P-value: 4.27E-07; mr1435_2 (All); LR P-value: 1.19E-37; mr1478_2 (All); LR P-value: 1.71E-09; mr1546_2 (Ind_All); LR P-value: 1.24E-12; mr1598_2 (All); LR P-value: 3.87E-33; mr1599_2 (Ind_All); LR P-value: 1.36E-08; mr1649_2 (All); LR P-value: 3.64E-11; mr1654_2 (Ind_All); LR P-value: 5.62E-06; mr1828_2 (All); LMM P-value: 3.95E-07; mr1828_2 (Ind_All); LR P-value: 2.58E-10; mr1938_2 (All); LR P-value: 6.27E-16; mr1971_2 (All); LR P-value: 2.72E-22 |
LOC_Os05g45430.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os05g45430.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 86.694; most accessible tissue: Minghui63 panicle, score: 95.346 |
| vg0526358137 (J) | chr05 | 26358137 | A | G | 60.40% | 0.08% | G -> A |
mr1022 (All); LR P-value: 3.67E-28;
mr1022 (Ind_All); LR P-value: 3.48E-12; mr1141 (All); LR P-value: 2.89E-43; mr1149 (All); LR P-value: 1.13E-12; mr1546 (All); LR P-value: 5.61E-30; mr1915 (All); LR P-value: 2.91E-07; mr1141_2 (All); LR P-value: 6.94E-56; mr1175_2 (All); LR P-value: 2.05E-21; mr1195_2 (All); LR P-value: 6.35E-21; mr1195_2 (Ind_All); LR P-value: 3.14E-10; mr1349_2 (All); LR P-value: 1.11E-09; mr1352_2 (Ind_All); LR P-value: 7.41E-10; mr1546_2 (All); LR P-value: 8.29E-50; mr1546_2 (Ind_All); LR P-value: 1.11E-11; mr1645_2 (All); LR P-value: 5.06E-08; mr1654_2 (All); LR P-value: 7.17E-07; mr1654_2 (Ind_All); LR P-value: 1.80E-06; mr1682_2 (Ind_All); LR P-value: 3.61E-06; mr1828_2 (All); LMM P-value: 6.58E-06; LR P-value: 3.43E-71; mr1828_2 (Ind_All); LR P-value: 1.61E-10; mr1837_2 (All); LR P-value: 6.49E-08; mr1893_2 (All); LR P-value: 9.80E-11; mr1915_2 (All); LR P-value: 3.52E-06; mr1938_2 (All); LR P-value: 1.00E-14 |
LOC_Os05g45430.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os05g45430.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 88.129; most accessible tissue: Minghui63 panicle, score: 96.546 |
| vg0526358356 (J) | chr05 | 26358356 | G | C | 62.10% | 0.00% | C -> G | NA |
LOC_Os05g45430.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
The average chromatin accessibility score: 93.232; most accessible tissue: Minghui63 panicle, score: 98.892 |
| vg0526358471 (J) | chr05 | 26358471 | G | A | 62.10% | 0.00% | A -> G | NA |
LOC_Os05g45430.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
The average chromatin accessibility score: 97.401; most accessible tissue: Callus, score: 99.319 |
| vg0526358536 (J) | chr05 | 26358536 | G | C | 89.40% | 0.99% | G -> C | NA |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os05g45430.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 97.564; most accessible tissue: Minghui63 panicle, score: 99.357 |