26 variations found. Os03g0281500/LOC_Os03g17300 (TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog; expressed), ranging from 9,632,644 bp to 9,636,759 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os03g17300 | TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed; RAP ID: Os03g0281500; MSU ID: LOC_Os03g17300 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| vg0309632726 (J) | chr03 | 9632726 | T | C | 64.30% | 0.06% | T -> C |
LOC_Os03g17300.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17300.2 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17310.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.2 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 97.002; most accessible tissue: Minghui63 flag leaf, score: 99.745 |
|
| vg0309632760 (J) | chr03 | 9632760 | CA | C | 99.70% | 0.00% | CA -> C | NA |
LOC_Os03g17300.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17300.2 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17310.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.1 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.2 Alt: C| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 97.075; most accessible tissue: Minghui63 flag leaf, score: 99.740 |
| vg0309632828 (J) | chr03 | 9632828 | G | A | 99.60% | 0.00% | G -> A | NA |
LOC_Os03g17300.1 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)
LOC_Os03g17300.2 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17300.3 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17300.4 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17310.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17270.1 Alt: A| upstream_gene_variant MODIFIER(snpEff) LOC_Os03g17270.2 Alt: A| upstream_gene_variant MODIFIER(snpEff) LOC_Os03g17280.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 95.993; most accessible tissue: Minghui63 flag leaf, score: 99.616 |
| vg0309632976 (J) | chr03 | 9632976 | A | G | 64.30% | 0.00% | A -> G |
LOC_Os03g17300.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17300.2 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17310.1 Alt: G| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.1 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17270.2 Alt: G| upstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 96.066; most accessible tissue: Minghui63 flag leaf, score: 99.505 |
|
| vg0309633213 (J) | chr03 | 9633213 | A | C | 69.70% | 0.06% | A -> C |
LOC_Os03g17300.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.3 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.4 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 94.815; most accessible tissue: Minghui63 flag leaf, score: 99.326 |
|
| vg0309633227 (J) | chr03 | 9633227 | C | A | 70.20% | 0.06% | C -> A |
LOC_Os03g17300.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.3 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.4 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 94.938; most accessible tissue: Minghui63 flag leaf, score: 99.345 |
|
| vg0309633232 (J) | chr03 | 9633232 | T | C | 70.30% | 0.06% | T -> C |
LOC_Os03g17300.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.3 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.4 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 94.919; most accessible tissue: Minghui63 flag leaf, score: 99.347 |
|
| vg0309633504 (J) | chr03 | 9633504 | G | A | 64.30% | 0.06% | G -> A |
LOC_Os03g17300.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
LOC_Os03g17300.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.3 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.4 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 93.954; most accessible tissue: Minghui63 flag leaf, score: 98.921 |
|
| vg0309633533 (J) | chr03 | 9633533 | G | T | 94.50% | 0.00% | G -> T | NA |
LOC_Os03g17300.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 94.235; most accessible tissue: Minghui63 flag leaf, score: 99.073 |
| vg0309633918 (J) | chr03 | 9633918 | A | G | 64.30% | 0.06% | A -> G |
LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.1 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.2 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.3 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.4 Alt: G| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) The average chromatin accessibility score: 89.563; most accessible tissue: Minghui63 flag leaf, score: 98.119 |
|
| vg0309634262 (J) | chr03 | 9634262 | G | T | 99.70% | 0.00% | G -> T | NA |
LOC_Os03g17300.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
LOC_Os03g17300.2 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.3 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) LOC_Os03g17300.4 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2) The average chromatin accessibility score: 91.148; most accessible tissue: Minghui63 flag leaf, score: 97.049 |
| vg0309634286 (J) | chr03 | 9634286 | C | T | 95.10% | 0.00% | C -> T |
LOC_Os03g17300.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 91.611; most accessible tissue: Minghui63 flag leaf, score: 97.209 |
|
| vg0309634297 (J) | chr03 | 9634297 | C | T | 99.60% | 0.00% | C -> T | NA |
LOC_Os03g17300.1 Alt: T| missense_variant MODERATE(snpEff)
LOC_Os03g17300.2 Alt: T| missense_variant MODERATE(snpEff) LOC_Os03g17300.3 Alt: T| missense_variant MODERATE(snpEff) LOC_Os03g17300.4 Alt: T| missense_variant MODERATE(snpEff) LOC_Os03g17310.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17280.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.910; most accessible tissue: Minghui63 flag leaf, score: 97.346 |
| vg0309634314 (J) | chr03 | 9634314 | C | A | 98.90% | 0.00% | C -> A | NA |
LOC_Os03g17300.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.3 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os03g17300.4 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 91.928; most accessible tissue: Minghui63 flag leaf, score: 97.173 |
| vg0309634769 (J) | chr03 | 9634769 | G | A | 99.30% | 0.00% | G -> A,C | NA |
LOC_Os03g17300.1 Alt: C| synonymous_variant LOW(snpEff)
LOC_Os03g17300.2 Alt: C| synonymous_variant LOW(snpEff) LOC_Os03g17300.3 Alt: C| synonymous_variant LOW(snpEff) LOC_Os03g17300.4 Alt: C| synonymous_variant LOW(snpEff) LOC_Os03g17310.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17280.1 Alt: C| downstream_gene_variant MODIFIER(snpEff) LOC_Os03g17300.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.2 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 95.324; most accessible tissue: Minghui63 flag leaf, score: 98.410 |
| vg0309635234 (J) | chr03 | 9635234 | A | G | 64.30% | 0.06% | A -> G |
LOC_Os03g17300.1 Alt: DEL/frameshift_variant(CooVar)
LOC_Os03g17300.3 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.4 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.2 Alt: DEL/frameshift_variant(CooVar) LOC_Os03g17300.1 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.2 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: G| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 96.193; most accessible tissue: Minghui63 flag leaf, score: 98.389 |
|
| vg0309635255 (J) | chr03 | 9635255 | G | A | 95.10% | 0.00% | G -> A |
LOC_Os03g17300.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 96.158; most accessible tissue: Minghui63 flag leaf, score: 98.362 |
|
| vg0309635274 (J) | chr03 | 9635274 | G | A | 99.70% | 0.00% | G -> A | NA |
LOC_Os03g17300.1 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/possibly damaging(PolyPhen-2)
LOC_Os03g17300.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/possibly damaging(PolyPhen-2) LOC_Os03g17300.3 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/possibly damaging(PolyPhen-2) LOC_Os03g17300.4 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/possibly damaging(PolyPhen-2) The average chromatin accessibility score: 96.211; most accessible tissue: Minghui63 flag leaf, score: 98.394 |
| vg0309635330 (J) | chr03 | 9635330 | G | A | 99.60% | 0.00% | G -> A | NA |
LOC_Os03g17300.1 Alt: A| synonymous_variant LOW(snpEff)
LOC_Os03g17300.2 Alt: A| synonymous_variant LOW(snpEff) LOC_Os03g17300.3 Alt: A| synonymous_variant LOW(snpEff) LOC_Os03g17300.4 Alt: A| synonymous_variant LOW(snpEff) LOC_Os03g17310.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff) LOC_Os03g17280.1 Alt: A| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 95.267; most accessible tissue: Minghui63 flag leaf, score: 98.316 |
| vg0309635495 (J) | chr03 | 9635495 | C | T | 95.10% | 0.00% | C -> T |
LOC_Os03g17300.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os03g17300.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.3 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os03g17300.4 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 95.535; most accessible tissue: Minghui63 flag leaf, score: 97.701 |
|
| vg0309635639 (J) | chr03 | 9635639 | CA | C | 80.60% | 3.94% | CA -> C | NA |
LOC_Os03g17310.1 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17300.2 Alt: C| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.1 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: C| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 92.744; most accessible tissue: Minghui63 flag leaf, score: 95.880 |
| vg0309635640 (J) | chr03 | 9635640 | AT | ATT | 70.40% | 0.21% | ATT -> AT,A,ATTT | NA |
LOC_Os03g17310.1 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17300.2 Alt: A| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.1 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: A| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.1 Alt: ATTT| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: ATTT| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar) LOC_Os03g17310.1 Alt: ATTT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.2 Alt: ATTT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: ATTT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: ATTT| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17310.1 Alt: AT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.2 Alt: AT| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: AT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.1 Alt: AT| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: AT| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: AT| intron_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 92.721; most accessible tissue: Minghui63 flag leaf, score: 95.880 |
| vg0309635726 (J) | chr03 | 9635726 | TATCACG CCAGTAA | T | 70.30% | 0.06% | TATCACGCCA GTAA -> T | NA |
LOC_Os03g17300.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17310.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.2 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 91.702; most accessible tissue: Callus, score: 96.185 |
| vg0309636177 (J) | chr03 | 9636177 | A | T | 64.50% | 0.06% | A -> T |
LOC_Os03g17300.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os03g17310.1 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.2 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.3 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17300.4 Alt: T| 3_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os03g17280.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) N Alt: DEL/silent_mutation(CooVar) The average chromatin accessibility score: 87.418; most accessible tissue: Minghui63 flag leaf, score: 94.434 |
|
| vg0309636224 (J) | chr03 | 9636224 | T | C | 64.30% | 0.06% | T -> C |
LOC_Os03g17310.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
LOC_Os03g17310.1 Alt: DEL/frameshift_variant(CooVar) The average chromatin accessibility score: 86.959; most accessible tissue: Minghui63 flag leaf, score: 94.073 |
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