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Gene ID/Symbol/Name (e.g., LOC_Os01g08570 or hwh1 or Os01g0180900 or gly%ltransferase, note: wildcard character '%' is also acceptable.):
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Search Results:

3 variations found. Os02g0663900/LOC_Os02g44480 (pentatricopeptide; putative; expressed), ranging from 26,922,511 bp to 26,924,209 bp (including 0 kb upstream and 0 kb downstream of the gene).

Gene IDAnnotation
LOC_Os02g44480 pentatricopeptide, putative; RAP ID: Os02g0663900; MSU ID: LOC_Os02g44480

Gene Expression Atlas:

The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.

Variation Map (with Chromatin Accessibility Map/ Non-coding Varation Scores Map) in Searched Region:

The 'big effect' variations are marked out:

ColorExplainDetails
red High impact variants defined by snpEff 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff.
purple 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here.

Detailed Variation Information:

Var ID Chrom Position Primary Allele Secondary Allele Primary Allele Frequency DEL Frequency Var GWAS Results Effect
vg0226922746 (J) chr02 26922746 G A 98.60% 0.00% G -> A NA
LOC_Os02g44480.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
The average chromatin accessibility score: 72.061; most accessible tissue: Zhenshan97 root, score: 86.685
vg0226923051 (J) chr02 26923051 T C 63.60% 0.19% C -> T NA
LOC_Os02g44480.1 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)/benign(PolyPhen-2)
LOC_Os02g44480.1 Alt: DEL/frameshift_variant(CooVar)
The average chromatin accessibility score: 76.225; most accessible tissue: Zhenshan97 root, score: 85.175
vg0226923436 (J) chr02 26923436 A G 63.50% 0.25% G -> A NA
LOC_Os02g44480.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os02g44480.1 Alt: DEL/frameshift_variant(CooVar)
The average chromatin accessibility score: 74.215; most accessible tissue: Callus, score: 83.021