54 variations found. Os02g0250400/LOC_Os02g15230 (GDSL-like lipase%2Facylhydrolase; putative; expressed), ranging from 8,501,441 bp to 8,504,977 bp (including 0 kb upstream and 0 kb downstream of the gene).
| Gene ID | Annotation |
|---|---|
| LOC_Os02g15230 | GDSL-like lipase/acylhydrolase, putative, expressed; RAP ID: Os02g0250400; MSU ID: LOC_Os02g15230 |
| MSU ID | RAP ID | Symbol | Name | Explanation | Recommended Gene Symbol | Recommended Gene Name |
|---|---|---|---|---|---|---|
| LOC_Os02g15230 | Os02g0250400 | OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c | GDSL esterase/lipase protein 33 | GELP33 | GDSL ESTERASE/LIPASE PROTEIN 33 |
The expression data is from the CREP database. And the expression value is log2-transformed. Move the mouse over the cells of the heat map to get detailed tissue information and expression values.
| Color | Explain | Details |
|---|---|---|
| red | High impact variants defined by snpEff | 'STOP_LOST', 'START_LOST', 'STOP_GAINED', 'FRAME_SHIFT' et. al., the details can be found at http://snpef f.sourceforge.net/SnpEff_manual.html#eff. |
| purple | 'Damaging' or 'probably damaging' non-synonymous SNPs defined by PolyPhen-2 | This is a qualitative result of nonsynonymous SNP annotation, where 'damaging' or 'probably damaging' means that the variant is more likely to affect protein function. Details can be found here. |
| Var ID | Chrom | Position | Primary Allele | Secondary Allele | Primary Allele Frequency | DEL Frequency | Var | GWAS Results | Effect |
|---|---|---|---|---|---|---|---|---|---|
| STR0208504046 (J) | chr02 | 8504046 | A | C | 84.80% | 0.00% | A -> C | NA |
|
| vg0208501636 (J) | chr02 | 8501636 | A | G | 94.20% | 0.00% | A -> G | NA |
LOC_Os02g15230.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g15230.2 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.470; most accessible tissue: Zhenshan97 root, score: 99.904 |
| vg0208501655 (J) | chr02 | 8501655 | C | CGAGAGA GAGA | 48.90% | 0.00% | C -> CGAGAGAGAG A,CGAGAGAG AGAGAGA,CG AGAGAGA,CG AGAGCGAGAG AGAGA,CGA, CGAGAGAGAG AGA | NA |
LOC_Os02g15230.1 Alt: CGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g15230.2 Alt: CGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CGAGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CGAGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGAGAGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGAGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGAGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGAGAGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CGAGAGCGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CGAGAGCGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGAGAGCGAGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGAGAGCGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGAGAGCGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGAGAGCGAGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CGAGAGAGA| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CGAGAGAGA| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.420; most accessible tissue: Zhenshan97 root, score: 99.882 |
| vg0208501661 (J) | chr02 | 8501661 | A | C | 98.60% | 0.30% | A -> C | NA |
N Alt: DEL/silent_mutation(CooVar)
LOC_Os02g15230.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.416; most accessible tissue: Zhenshan97 root, score: 99.879 |
| vg0208501670 (J) | chr02 | 8501670 | GCT | G | 99.70% | 0.00% | GCT -> G | NA |
LOC_Os02g15230.1 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff)
LOC_Os02g15230.2 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: G| 5_prime_UTR_variant MODIFIER(snpEff) LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 99.419; most accessible tissue: Zhenshan97 root, score: 99.877 |
| vg0208501713 (J) | chr02 | 8501713 | ATC | ATCTCTC | 55.10% | 0.00% | ATC -> ATCTC,ATCT CTC,ATCTCT CTC,A | NA |
LOC_Os02g15230.1 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g15230.2 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: A| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: A| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: ATCTCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: ATCTCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: ATCTCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: ATCTCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: ATCTCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: ATCTCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: ATCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: ATCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: ATCTCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: ATCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: ATCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: ATCTCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: ATCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: ATCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: ATCTC| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: ATCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: ATCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: ATCTC| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.464; most accessible tissue: Zhenshan97 root, score: 99.841 |
| vg0208501808 (J) | chr02 | 8501808 | CTCT | CTCTTCT TCT | 43.50% | 0.00% | CTCT -> CTCTTCT,CT CTTCTTCT,C TCTTCTTCTT CT,C,CTCTT CTTCTTCTTC T | NA |
LOC_Os02g15230.1 Alt: CTCTTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar)
LOC_Os02g15230.2 Alt: CTCTTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CTCTTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CTCTTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CTCTTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CTCTTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CTCTTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CTCTTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: C| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: C| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CTCTTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CTCTTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.1 Alt: CTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.2 Alt: CTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: CTCTTCT| 5_prime_UTR_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: CTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: CTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: CTCTTCT| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 99.174; most accessible tissue: Zhenshan97 root, score: 99.698 |
| vg0208501927 (J) | chr02 | 8501927 | C | CTGG | 99.60% | 0.00% | C -> CTGG | NA |
LOC_Os02g15230.1 Alt: CTGG| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar)
LOC_Os02g15230.2 Alt: CTGG| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) LOC_Os02g15230.3 Alt: CTGG| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) The average chromatin accessibility score: 97.720; most accessible tissue: Zhenshan97 root, score: 99.152 |
| vg0208501930 (J) | chr02 | 8501930 | T | C | 99.60% | 0.00% | T -> C | NA |
LOC_Os02g15230.1 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os02g15230.2 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) LOC_Os02g15230.3 Alt: C| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar) The average chromatin accessibility score: 97.641; most accessible tissue: Zhenshan97 root, score: 99.088 |
| vg0208501933 (J) | chr02 | 8501933 | C | CGGA | 99.60% | 0.00% | C -> CGGA | NA |
LOC_Os02g15230.1 Alt: CGGA| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar)
LOC_Os02g15230.2 Alt: CGGA| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) LOC_Os02g15230.3 Alt: CGGA| disruptive_inframe_insertion MODERATE(snpEff)/inframe_variant(CooVar) The average chromatin accessibility score: 97.607; most accessible tissue: Zhenshan97 root, score: 99.054 |
| vg0208501970 (J) | chr02 | 8501970 | C | T | 99.30% | 0.00% | C -> T | NA |
LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff)
LOC_Os02g15230.2 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 97.085; most accessible tissue: Minghui63 flag leaf, score: 98.724 |
| vg0208501997 (J) | chr02 | 8501997 | T | G | 54.30% | 0.00% | G -> T |
LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os02g15230.2 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 96.556; most accessible tissue: Minghui63 flag leaf, score: 98.442 |
|
| vg0208502069 (J) | chr02 | 8502069 | C | T | 55.20% | 0.00% | T -> C |
mr1336 (All); LR P-value: 6.84E-12;
mr1557 (All); LR P-value: 5.14E-18; mr1579 (All); LR P-value: 2.80E-13; mr1815 (All); LR P-value: 2.31E-06; mr1909 (All); LR P-value: 8.17E-14; mr1921 (All); LR P-value: 2.01E-10; mr1232_2 (All); LR P-value: 1.10E-11; mr1557_2 (All); LR P-value: 2.17E-19; mr1641_2 (All); LR P-value: 7.77E-12; mr1767_2 (All); LR P-value: 5.38E-16; mr1909_2 (All); LR P-value: 1.57E-07 |
LOC_Os02g15230.1 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar)
LOC_Os02g15230.2 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.3 Alt: C| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 95.785; most accessible tissue: Minghui63 flag leaf, score: 98.022 |
| vg0208502072 (J) | chr02 | 8502072 | C | T | 99.70% | 0.00% | C -> T | NA |
LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff)
LOC_Os02g15230.2 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 95.296; most accessible tissue: Minghui63 flag leaf, score: 97.710 |
| vg0208502090 (J) | chr02 | 8502090 | C | T | 99.00% | 0.00% | C -> T | NA |
LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff)
LOC_Os02g15230.2 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 91.545; most accessible tissue: Minghui63 flag leaf, score: 97.574 |
| vg0208502302 (J) | chr02 | 8502302 | T | G | 99.30% | 0.00% | T -> G | NA |
LOC_Os02g15230.2 Alt: G| missense_variant MODERATE(snpEff)
LOC_Os02g15230.1 Alt: G| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: G| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 90.154; most accessible tissue: Minghui63 flag leaf, score: 96.276 |
| vg0208502326 (J) | chr02 | 8502326 | C | T | 98.10% | 0.00% | C -> T | NA |
LOC_Os02g15230.2 Alt: T| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) The average chromatin accessibility score: 87.500; most accessible tissue: Minghui63 flag leaf, score: 95.943 |
| vg0208502329 (J) | chr02 | 8502329 | C | A | 94.50% | 0.00% | C -> A,T |
LOC_Os02g15230.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os02g15230.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.3 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.2 Alt: T| missense_variant MODERATE(snpEff) LOC_Os02g15230.1 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: T| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.147; most accessible tissue: Minghui63 flag leaf, score: 95.773 |
|
| vg0208502335 (J) | chr02 | 8502335 | C | A | 90.50% | 0.00% | C -> A,G |
LOC_Os02g15230.2 Alt: A| missense_variant MODERATE(snpEff)/nonsynonymous_codon(CooVar)
LOC_Os02g15230.1 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.3 Alt: A| synonymous_variant LOW(snpEff)/synonymous_codon(CooVar) LOC_Os02g15230.2 Alt: G| missense_variant MODERATE(snpEff) LOC_Os02g15230.1 Alt: G| synonymous_variant LOW(snpEff) LOC_Os02g15230.3 Alt: G| synonymous_variant LOW(snpEff) LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.101; most accessible tissue: Minghui63 flag leaf, score: 95.707 |
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| vg0208502464 (J) | chr02 | 8502464 | A | T | 94.50% | 0.00% | A -> T |
LOC_Os02g15230.1 Alt: T| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar)
LOC_Os02g15230.2 Alt: T| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar) LOC_Os02g15230.3 Alt: T| splice_region_variant&intron_variant LOW(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff)/silent_mutation(CooVar) The average chromatin accessibility score: 87.013; most accessible tissue: Minghui63 flag leaf, score: 93.957 |
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| vg0208502485 (J) | chr02 | 8502485 | A | G | 99.30% | 0.00% | A -> G | NA |
LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15230.1 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.2 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.596; most accessible tissue: Zhenshan97 young leaf, score: 94.147 |
| vg0208502494 (J) | chr02 | 8502494 | C | A | 99.30% | 0.00% | C -> A | NA |
LOC_Os02g15220.1 Alt: A| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g15220.2 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: A| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15230.1 Alt: A| intron_variant MODIFIER(snpEff) LOC_Os02g15230.2 Alt: A| intron_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: A| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.726; most accessible tissue: Zhenshan97 young leaf, score: 94.255 |
| vg0208502503 (J) | chr02 | 8502503 | G | T | 99.30% | 0.00% | G -> T | NA |
LOC_Os02g15220.1 Alt: T| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g15220.2 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: T| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15230.1 Alt: T| intron_variant MODIFIER(snpEff) LOC_Os02g15230.2 Alt: T| intron_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: T| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.843; most accessible tissue: Zhenshan97 young leaf, score: 94.734 |
| vg0208502519 (J) | chr02 | 8502519 | A | G | 99.30% | 0.00% | A -> G | NA |
LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15230.1 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.2 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.806; most accessible tissue: Zhenshan97 young leaf, score: 94.705 |
| vg0208502544 (J) | chr02 | 8502544 | T | G | 99.30% | 0.00% | T -> G | NA |
LOC_Os02g15220.1 Alt: G| downstream_gene_variant MODIFIER(snpEff)
LOC_Os02g15220.2 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15220.4 Alt: G| downstream_gene_variant MODIFIER(snpEff) LOC_Os02g15230.1 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.2 Alt: G| intron_variant MODIFIER(snpEff) LOC_Os02g15230.3 Alt: G| intron_variant MODIFIER(snpEff) The average chromatin accessibility score: 87.814; most accessible tissue: Zhenshan97 young leaf, score: 95.387 |
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