Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The detailed information about mr1819 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg1210414574 sf1210411987 12 10414574 2.68E-07 2.68E-07
vg1214600105 sf1214597445 12 14600105 3.31E-07 3.31E-07
vg0907175535 sf0907174535 9 7175535 7.42E-07 7.42E-07
vg0905400732 sf0905399732 9 5400732 3.66E-06 3.66E-06
vg0327968455 sf0327961509 3 27968455 4.22E-06 4.22E-06