CTCGTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCACCTGAAACCACCACCACCACGACGCACGCATCACACAAAGAGTGAGTCAGCAAAACCAACGC[CGACGGCGACG/CGACGGCGACA]
GCGCCACGGATCAAGATGGCTCACGGCACGCGCGTACCGGGTGGCCCTGGCCGAGGGAGTGCTTGATGGCGAGGCCGGTGGCCTTGTTGACGAGCGCGAA
TTCGCGCTCGTCAACAAGGCCACCGGCCTCGCCATCAAGCACTCCCTCGGCCAGGGCCACCCGGTACGCGCGTGCCGTGAGCCATCTTGATCCGTGGCGC[CGTCGCCGTCG/TGTCGCCGTCG]
GCGTTGGTTTTGCTGACTCACTCTTTGTGTGATGCGTGCGTCGTGGTGGTGGTGGTTTCAGGTGAAGCTGGCGCCGTTCAACCCGGAGTACCCGGACGAG
| Populations | Population Size | Frequency of CGACGGCGACA(primary allele) | Frequency of CGACGGCGACG(secondary allele) | Frequency of N | Frequency of DEL | Frequency of others Allele |
|---|---|---|---|---|---|---|
| All | 774 | 63.30% | 33.70% | 4.52% | 0.00% | NA |
| All Indica | 492 | 95.10% | 2.50% | 2.44% | 0.00% | NA |
| All Japonica | 244 | 2.20% | 90.60% | 7.38% | 0.00% | NA |
| Aus | 7 | 85.70% | 14.30% | 0.00% | 0.00% | NA |
| Indica I | 492 | 95.10% | 2.50% | 2.44% | 0.00% | NA |
| Indica II | 215 | 98.10% | 0.90% | 0.93% | 0.00% | NA |
| Indica III | 21 | 95.20% | 4.80% | 0.00% | 0.00% | NA |
| Indica Intermediate | 190 | 91.60% | 3.90% | 4.74% | 0.00% | NA |
| Temperate Japonica | 189 | 1.10% | 92.10% | 6.88% | 0.00% | NA |
| Tropical Japonica | 36 | 0.00% | 88.90% | 11.11% | 0.00% | NA |
| Japonica Intermediate | 19 | 16.70% | 78.90% | 5.26% | 0.00% | NA |
| VI/Aromatic | 9 | 37.50% | 55.60% | 11.11% | 0.00% | NA |
| Intermediate | 231 | 80.10% | 14.70% | 6.06% | 0.00% | NA |